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• stop continuum
• move old snapshot out of the way
• unpack the new installation into /opt with tar -xzvf /path/to/apache-continuum-X.Y.Z-SNAPSHOT.tar.gz
• update apps/continuum/WEB-INF/classes/META-INF/plexus/application.xml to set the from-mailbox to continuum@apache.org
• change ownership of unpacked files sudo chown -R continuum apache-continuum-1.3.3-SNAPSHOT and sudo chgrp -R continuum apache-continuum-1.3.3-SNAPSHOT
• edit /etc/init.d/continuum to the new installation location
• depending on the upgrade path, you may need to upgrade the Continuum database. Please check the Continuum release notes.
• start continuum

Ideally, these steps will be better isolated from the installation and/or automated in future.