...
prmtop: https://github.com/SciGaP/XSEDE-Job-Scripts/blob/master/Stampede/Amber/prmtop
03_Prod.info
03_Prod.mdcrd
03_Prod.out
03_Prod.rst
Amber.oJobID (nothing interesting)
...
pdb1y6l-EM-vacuum.tpr: https://github.com/SciGaP/XSEDE-Job-Scripts/blob/master/Stampede/GROMACS/pdb1y6l-EM-vacuum.tpr
pdb1y6l-EM-vacuum.tpr.trr
pdb1y6l-EM-vacuum.tpr.edr
pdb1y6l-EM-vacuum.tpr.log
pdb1y6l-EM-vacuum.gro
GROMACS.oJobID
...
in.friction: https://github.com/SciGaP/XSEDE-Job-Scripts/blob/master/Stampede/LAMMPS/in.friction
log.lammps
LAMMPS.oJobID
...
Al.pz-vbc.UPF: https://github.com/SciGaP/XSEDE-Job-Scripts/blob/master/Stampede/ESPRESSO/Al.pz-vbc.UPF
Al.sample.out
Al_exc3.save/ (directory)
Al_exc3.wfc1
Al_exc3.wfc2
Al_exc3.wfc3
Al_exc3.wfc4 ESPRESSO.oJobID (nothing)
...
water.nw: https://github.com/SciGaP/XSEDE-Job-Scripts/blob/master/Stampede/NWCHEM/water.nw
h2o_freq.b
h2o_freq.drv.hess
h2o_freq.mp2nos
h2o_freq.b^-1
h2o_freq.fd_ddipole
h2o_freq.nmode
h2o_freq.c
h2o_freq.hess
h2o_freq.p
h2o_freq.db
h2o_freq.movecs
h2o_freq.zmat NWCHEM.oJobID
...
reads.right.fq: https://github.com/SciGaP/XSEDE-Job-Scripts/blob/master/Stampede/Trinity/reads.right.fq
Trinity: Everything under the specified Output directory
Trinity.fasta (most interesting maybe)
Trinity.oJobID
both.fa jellyfish.kmers.fa
both.fa.read_count scaffolding_entries.sam
bowtie.nameSorted.sam target.1.ebwt
bowtie.nameSorted.sam.finished target.2.ebwt
bowtie.out.finished target.3.ebwt
chrysalis target.4.ebwt
inchworm.K25.L25.fa target.fa
inchworm.K25.L25.fa.finished target.fa.finished
inchworm.kmer_count target.rev.1.ebwt
iworm_bundle_file_listing.txt target.rev.2.ebwt
iworm_scaffolds.txt Trinity.fasta
iworm_scaffolds.txt.finished Trinity.timing
jellyfish.1.finished
...
ind.pdbqt: https://github.com/SciGaP/XSEDE-Job-Scripts/blob/master/BigRed2/Autodock/ind.pdbqt
ind.dlg Autodock.oJobID (nothing interesting)