All inputs files are taken from public tutorials. See https://github.com/SciGaP/XSEDE-Job-Scripts/ for sources.
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Download from 02_Heat.rst: https://github.com/SciGaP/XSEDE-Job-Scripts/blob/master/Stampede/Amber/iu.box.com/wrf
Download from https://iu.box.com/amber
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prmtop: https://github.com/SciGaP/XSEDE-Job-Scripts/blob/master/Stampede/Amber/prmtop
Download from https://iu.box.com/GROMMACS
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pdb1y6l-EM-vacuum.tpr: .trr
pdb1y6l-EM-vacuum.tpr.edr
https://github.com/SciGaP/XSEDE-Job-Scripts/blob/master/Stampede/GROMACS/pdb1y6l-EM-vacuum.tpr.log
pdb1y6l-EM-vacuum.gro
GROMACS.oJobID
Download from in.friction: https://githubiu.box.com/SciGaP/XSEDE-Job-Scripts/blob/master/Stampede/LAMMPS/LAMMPS
Friction_Simulation_Input: in.friction
Download from Al.sample.in: https://githubiu.box.com/SciGaP/XSEDE-Job-Scripts/blob/master/Stampede/ESPRESSO/Alespresso
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Download from https://iu.box.com/nwchem
h2o_freq.b
h2o_freq.drv.hess
h2o_freq.mp2nos
h2o_freq.b^-1
h2o_freq.fd_ddipole
h2o_freq.nmode
h2o_freq.c
h2o_freq.hess
h2o_freq.p
h2o_freq.db
h2o_freq.movecs
h2o_freq.zmat NWCHEM.oJobID
Download from https://iu.box.com/trinity
both.fa jellyfish.kmers.fa
both.fa.read_count scaffolding_entries.sam
bowtie.nameSorted.sam target.1.ebwt
bowtie.nameSorted.sam.finished target.2.ebwt
bowtie.out.finished target.3.ebwt
chrysalis target.4.ebwt
inchworm.K25.L25.fa target.fa
inchworm.K25.L25.fa.finished target.fa.finished
inchworm.kmer_count target.rev.1.ebwt
iworm_bundle_file_listing.txt target.rev.2.ebwt
iworm_scaffolds.txt Trinity.fasta
iworm_scaffolds.txt.finished Trinity.timing
jellyfish.1.finished
Download from https://iu.box.com/autodock
water.nw: https://github.com/SciGaP/XSEDE-Job-Scripts/blob/master/Stampede/NWCHEM/water.nw
reads.left.fq: https://github.com/SciGaP/XSEDE-Job-Scripts/blob/master/Stampede/Trinity/reads.left.fq
reads.right.fq: https://github.com/SciGaP/XSEDE-Job-Scripts/blob/master/Stampede/Trinity/reads.right.fq
AD4_parameters.dat: https://github.com/SciGaP/XSEDE-Job-Scripts/blob/master/BigRed2/Autodock/AD4_parameters.dat
hsg1.A.map: https://github.com/SciGaP/XSEDE-Job-Scripts/blob/master/BigRed2/Autodock/hsg1.A.map
hsg1.C.map: https://github.com/SciGaP/XSEDE-Job-Scripts/blob/master/BigRed2/Autodock/hsg1.C.map
hsg1.d.map: https://github.com/SciGaP/XSEDE-Job-Scripts/blob/master/BigRed2/Autodock/hsg1.d.map
hsg1.e.map: https://github.com/SciGaP/XSEDE-Job-Scripts/blob/master/BigRed2/Autodock/hsg1.e.map
hsg1.HD.map: https://github.com/SciGaP/XSEDE-Job-Scripts/blob/master/BigRed2/Autodock/hsg1.HD.map
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ind.dlg Autodock.oJobID (nothing interesting): https://github.com/SciGaP/XSEDE-Job-Scripts/blob/master/BigRed2/Autodock/ind.dpfind.pdbqt: https://github.com/SciGaP/XSEDE-Job-Scripts/blob/master/BigRed2/Autodock/ind.pdbqt