Apache Airavata
All inputs files are taken from public tutorials. See https://github.com/SciGaP/XSEDE-Job-Scripts/ for sources.
Download from https://iu.box.com/wrf
Download from https://iu.box.com/amber
03_Prod.info
03_Prod.mdcrd
03_Prod.out
03_Prod.rst
Amber.oJobID (nothing interesting)
Download from https://iu.box.com/GROMMACS
pdb1y6l-EM-vacuum.tpr.trr
pdb1y6l-EM-vacuum.tpr.edr
pdb1y6l-EM-vacuum.tpr.log
pdb1y6l-EM-vacuum.gro
GROMACS.oJobID
Download from https://iu.box.com/LAMMPS
Friction_Simulation_Input: in.friction
LAMMPS_Simulation_Log
LAMMPS.oJobID
Download from https://iu.box.com/espresso
Al.sample.out
Al_exc3.save/ (directory)
Al_exc3.wfc1
Al_exc3.wfc2
Al_exc3.wfc3
Al_exc3.wfc4 ESPRESSO.oJobID (nothing)
Download from https://iu.box.com/nwchem
h2o_freq.b
h2o_freq.drv.hess
h2o_freq.mp2nos
h2o_freq.b^-1
h2o_freq.fd_ddipole
h2o_freq.nmode
h2o_freq.c
h2o_freq.hess
h2o_freq.p
h2o_freq.db
h2o_freq.movecs
h2o_freq.zmat NWCHEM.oJobID
Download from https://iu.box.com/trinity
Trinity: Everything under the specified Output directory
Trinity.fasta (most interesting maybe)
Trinity.oJobID
both.fa jellyfish.kmers.fa both.fa.read_count scaffolding_entries.sam bowtie.nameSorted.sam target.1.ebwt bowtie.nameSorted.sam.finished target.2.ebwt bowtie.out.finished target.3.ebwt chrysalis target.4.ebwt inchworm.K25.L25.fa target.fa inchworm.K25.L25.fa.finished target.fa.finished inchworm.kmer_count target.rev.1.ebwt iworm_bundle_file_listing.txt target.rev.2.ebwt iworm_scaffolds.txt Trinity.fasta iworm_scaffolds.txt.finished Trinity.timing jellyfish.1.finished
Download from https://iu.box.com/autodock
ind.dlg Autodock.oJobID (nothing interesting)