Apache Airavata
All inputs files are taken from public tutorials. See https://github.com/SciGaP/XSEDE-Job-Scripts/ for sources.
namelist.input - https://github.com/SciGaP/XSEDE-Job-Scripts/blob/master/Stampede/WRF/namelist.input
wrfbdy_d01 - https://github.com/SciGaP/XSEDE-Job-Scripts/blob/master/Stampede/WRF/wrfbdy_d01
wrfinput_d01 - https://github.com/SciGaP/XSEDE-Job-Scripts/blob/master/Stampede/WRF/wrfinput_d01
02_Heat.rst: https://github.com/SciGaP/XSEDE-Job-Scripts/blob/master/Stampede/Amber/02_Heat.rst
03_Prod.in: https://github.com/SciGaP/XSEDE-Job-Scripts/blob/master/Stampede/Amber/03_Prod.in
prmtop: https://github.com/SciGaP/XSEDE-Job-Scripts/blob/master/Stampede/Amber/prmtop
03_Prod.info
03_Prod.mdcrd
03_Prod.out
03_Prod.rst
Amber.oJobID (nothing interesting)
pdb1y6l-EM-vacuum.tpr: https://github.com/SciGaP/XSEDE-Job-Scripts/blob/master/Stampede/GROMACS/pdb1y6l-EM-vacuum.tpr
pdb1y6l-EM-vacuum.tpr.trr
pdb1y6l-EM-vacuum.tpr.edr
pdb1y6l-EM-vacuum.tpr.log
pdb1y6l-EM-vacuum.gro
GROMACS.oJobID
in.friction: https://github.com/SciGaP/XSEDE-Job-Scripts/blob/master/Stampede/LAMMPS/in.friction
log.lammps
LAMMPS.oJobID
Al.sample.in: https://github.com/SciGaP/XSEDE-Job-Scripts/blob/master/Stampede/ESPRESSO/Al.sample.in
Al.pz-vbc.UPF: https://github.com/SciGaP/XSEDE-Job-Scripts/blob/master/Stampede/ESPRESSO/Al.pz-vbc.UPF
Al.sample.out
Al_exc3.save/ (directory)
Al_exc3.wfc1
Al_exc3.wfc2
Al_exc3.wfc3
Al_exc3.wfc4 ESPRESSO.oJobID (nothing)
water.nw: https://github.com/SciGaP/XSEDE-Job-Scripts/blob/master/Stampede/NWCHEM/water.nw
h2o_freq.b
h2o_freq.drv.hess
h2o_freq.mp2nos
h2o_freq.b^-1
h2o_freq.fd_ddipole
h2o_freq.nmode
h2o_freq.c
h2o_freq.hess
h2o_freq.p
h2o_freq.db
h2o_freq.movecs
h2o_freq.zmat NWCHEM.oJobID
reads.left.fq: https://github.com/SciGaP/XSEDE-Job-Scripts/blob/master/Stampede/Trinity/reads.left.fq
reads.right.fq: https://github.com/SciGaP/XSEDE-Job-Scripts/blob/master/Stampede/Trinity/reads.right.fq
Trinity: Everything under the specified Output directory
Trinity.fasta (most interesting maybe)
Trinity.oJobID
both.fa jellyfish.kmers.fa both.fa.read_count scaffolding_entries.sam bowtie.nameSorted.sam target.1.ebwt bowtie.nameSorted.sam.finished target.2.ebwt bowtie.out.finished target.3.ebwt chrysalis target.4.ebwt inchworm.K25.L25.fa target.fa inchworm.K25.L25.fa.finished target.fa.finished inchworm.kmer_count target.rev.1.ebwt iworm_bundle_file_listing.txt target.rev.2.ebwt iworm_scaffolds.txt Trinity.fasta iworm_scaffolds.txt.finished Trinity.timing jellyfish.1.finished
AD4_parameters.dat: https://github.com/SciGaP/XSEDE-Job-Scripts/blob/master/BigRed2/Autodock/AD4_parameters.dat
hsg1.A.map: https://github.com/SciGaP/XSEDE-Job-Scripts/blob/master/BigRed2/Autodock/hsg1.A.map
hsg1.C.map: https://github.com/SciGaP/XSEDE-Job-Scripts/blob/master/BigRed2/Autodock/hsg1.C.map
hsg1.d.map: https://github.com/SciGaP/XSEDE-Job-Scripts/blob/master/BigRed2/Autodock/hsg1.d.map
hsg1.e.map: https://github.com/SciGaP/XSEDE-Job-Scripts/blob/master/BigRed2/Autodock/hsg1.e.map
hsg1.HD.map: https://github.com/SciGaP/XSEDE-Job-Scripts/blob/master/BigRed2/Autodock/hsg1.HD.map
hsg1.maps.fld: https://github.com/SciGaP/XSEDE-Job-Scripts/blob/master/BigRed2/Autodock/hsg1.maps.fld
hsg1.NA.map: https://github.com/SciGaP/XSEDE-Job-Scripts/blob/master/BigRed2/Autodock/hsg1.NA.map
hsg1.N.map: https://github.com/SciGaP/XSEDE-Job-Scripts/blob/master/BigRed2/Autodock/hsg1.N.map
hsg1.OA.map: https://github.com/SciGaP/XSEDE-Job-Scripts/blob/master/BigRed2/Autodock/hsg1.OA.map
ind.dpf: https://github.com/SciGaP/XSEDE-Job-Scripts/blob/master/BigRed2/Autodock/ind.dpf
ind.pdbqt: https://github.com/SciGaP/XSEDE-Job-Scripts/blob/master/BigRed2/Autodock/ind.pdbqt
ind.dlg Autodock.oJobID (nothing interesting)