Piper Files contain cTAKES pipelines in a simple flat file format. They can be run via command line using the bin/runPiperFile script. They can also be run using the Piper File Submitter GUI. The GUI allows the user to enter and save command line parameters, making any future re-run of a piper file quick and easy.
Step-by-step guide
- Open the Piper File Submitter GUI ... execute bin/runPiperSubmitter
- Load a Piper File using the button.
- Enter command line parameter values in the table on the left.
- Alternatively, use the button to load a previously saved Piper File Command Line Interface (.piper_cli) value file.
- Save your parameter values with the button.
- Click to run the pipeline with the current parameter values.
In the parameter value table on the left, the rightmost column contains a button that can open a file chooser for convenience.
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