To set up PostgreSQL and MADlib with Anaconda Python on OSX, follow the super quick start. Otherwise, follow the regular guides for installing from binaries or compiling from source.
For developers, you may want to use the Docker image described in the Developer Guide.
Sometimes there are release specific variations of the installation procedures. These exceptions are listed at the bottom of this page in the section called Release Specific Installations.
MADlib requires python version 2.7. Currently, Python 3.x is not supported.
Currently supported database versions: Please see this page for supported databases and OS
The following python libraries are required for their associated modules:
Deep Learning: dill, grpcio==1.39.0, protobuf==3.17.3, hyperopt==0.2.5, tensorflow == 1.14, scikit-learn==0.19
XGBoost: pandas, xgboost==0.82
KNN: scipy==1.2.1
Unit tests: pgsanity
To set up PostgreSQL + MADlib with Anaconda Python on OSX:
PYTHON=/Users/janedoe/anaconda/bin/python
brew install postgresql
--with-python
' but passing the '--with-python
' flag is not supported anymore.Set up database and roles
Install the .dmg of latest madlib downloaded from MADlib website https://madlib.apache.org/download.html
Install and configure your database of choice. MADlib currently supports the following platforms:
MADlib requires the GNU M4 Unix macro processor which must be present for installation to succeed.
If the environment variables listed below are defined, it can save you some typing.
Postgres platform notes:
/usr/local/madlib/bin/madpack -s madlib -p postgres install madpack.py : INFO : Detected PostgreSQL version 9.5. madpack.py : INFO : *** Installing MADlib *** madpack.py : INFO : MADlib tools version = 1.9.1 (//usr/local/madlib/Versions/1.9.1/bin/../madpack/madpack.py) madpack.py : INFO : MADlib database version = None (host=localhost:5432, db=postgres, schema=madlib) madpack.py : INFO : Testing PL/Python environment... madpack.py : INFO : > Creating language PL/Python... madpack.py : ERROR : SQL command failed: SQL: CREATE LANGUAGE plpythonu; ERROR: could not access file "$libdir/plpython2": No such file or directory madpack.py : ERROR : Cannot create language plpythonu. Please check if you have configured and installed portid (your platform) with `--with-python` option. Stopping installation... madpack.py : ERROR : MADlib installation failed |
on Redhat / CentOS run the following as root:
yum install <madlib_package> --nogpgcheck |
or
rpm -i <madlib_package> |
Greenplum:
on Redhat / CentOS run the following as gpadmin:
gppkg -i <madlib_package> |
Ensure that psql, postgres, and pg_config are in your path
which psql postgres pg_config |
Ensure that the database is started and running
psql -c 'select version()' |
The above may need user/port/password setting depending on how the database has been configured.
Postgres:
/usr/local/madlib/bin/madpack -s madlib –p postgres install |
if environment variables are defined. Otherwise use a fully defined connection string:
/usr/local/madlib/bin/madpack -s madlib -p postgres -c [user[/password]@][host][:port][/database] install |
Greenplum Database:
/usr/local/madlib/bin/madpack –p greenplum install |
The above may need user/port/password setting depending on how the database has been configured.
Run the MADlib madpack deployment utility to install MADlib into each database that you want to use it in:
After installation gpadmin should grant all privileges on schema madlib to users who will be accessing MADlib functions. Otherwise, users will get "ERROR: permission denied for schema MADlib." Also, install checks (see next step below) will fail if CREATE TEMP TABLE privileges are not granted on the schema where MADlib is installed. See the PostgreSQL docs for information on schemas and privileges.
Test your installation
Postgres:
/usr/local/madlib/bin/madpack -s madlib –p postgres install-check |
Greenplum Database:
/usr/local/madlib/bin/madpack –p greenplum install-check |
The above may need user/port/password setting depending on how the database has been configured.
Please note that if the optimizer_control GUC is set to off in Greenplum, the following install checks will fail, and these MADlib functions will not work: decision tree, random forest, LDA , k-Means, PMML export for decision tree, PMML export for random forest. This will be fixed in a future release (MADLIB-1109). The parameter optimizer_control controls whether the server configuration parameter optimizer can be changed. The parameter optimizer controls whether the GPORCA optimizer is enabled when running SQL queries.
Requirements for installing MADlib:
Use below command to install and load the latest MADlib package uploaded on PGXN.
pgxn install madlib pgxn load madlib |
If you see the following error, it's likely that you are using Parallel Execution flags for make.
[ 86%] Performing build step for 'EP_boost' Ignored: make [ 86%] Performing install step for 'EP_boost' Ignored: make [ 86%] Completed 'EP_boost' [ 86%] Built target EP_boost make[1]: *** [all] Error 2 make: *** [all] Error 2 ERROR: command returned 2: make PG_CONFIG=/usr/local/pg10/bin/pg_config all |
You can run this as a workaround:
MAKEFLAGS='-j1' pgxn install madlib pgxn load madlib |
Or, if you want to use parallel execution, you can also install Boost 1.60 yourself, and tell cmake where to find it.
For example, on OSX that looks like this:
brew install boost@1.60 export BOOST_INCLUDEDIR=/usr/local/opt/boost@1.60/include/ |
Requirements for installing MADlib:
-DCXX11=1
during cmake, will auto-download Boost 1.75.0 if Boost > 1.65.0 is not found on the system.-DCXX11=1
will enable C++11, which is not fully supported, i.e, MADlib compiles but some install-check/dev-check tests may fail.In the $MADLIB_ROOT
directory (location of the MADlib source) run the following commands:
mkdir build cd build cmake .. make -j8 # if this causes issues, switch back to a plan `make` |
Above, we built the executables in the build
folder. This can, however, be any user-named folder (henceforth called $BUILD_ROOT
).
Deploy MADlib into the database with MADlib package manager madpack
located under $BUILD_ROOT/src/bin
.
Run the MADlib deployment utility to install MADlib into each database that you want to use it:
Postgres:
$BUILD_ROOT/src/bin/madpack -s madlib –p postgres install |
if environment variables are defined. Otherwise use a fully defined connection string:
$BUILD_ROOT/src/bin/madpack -s madlib -p postgres -c [user[/password]@][host][:port][/database] install |
Greenplum Database:
$BUILD_ROOT/src/bin/madpack –p greenplum install |
The above may need user/port/password setting depending on how the database has been configured.
To install:
$BUILD_ROOT/src/bin/madpack -p postgres -c [user[/password]@][host][:port][/database] install |
To make sure that the installation is successful:
$BUILD_ROOT/src/bin/madpack -p postgres -c [user[/password]@][host][:port][/database] install-check |
For more information on the usage of madpack:
$BUILD_ROOT/src/bin/madpack --help |
The variables below will be automatically used by the madpack
installer if no connection string is provided:
PGUSER
or USER
(defaults to OS username)PGPASSWORD
(defaults to empty)PGHOST
(defaults to 'localhost')PGDATABASE
(defaults to OS username)PGPORT
(defaults to 5432)An example of deploying MADlib using the environment variables:
export PGPORT=5430 export PGHOST=127.0.0.1 export PGDATABASE=madlibtest $BUILD_ROOT/src/bin/madpack -p postgres install |
The variables below can be set in GPDB in case memory-related issues show up. Feel free to adjust them based on the specifics of the installed system.
set max_statement_mem='50GB'; set statement_mem='50GB'; set memory_spill_ratio=80; set gp_resqueue_memory_policy=auto; set work_mem='4GB'; set gp_vmem_protect_limit=20000 |
Upgrade MADlib gppkg.
Upgrading gppkg to a higher version of MADlib:
For example, upgrading from 1.15.1 to 1.16
on Redhat / CentOS run the following as gpadmin:
gppkg -u <madlib_package_upgrading_to> |
Upgrade the MADlib deployment in the database
madpack -p <platform> -c <connection> upgrade |
Upgrading gppkg for the same version of MADlib:
For example, upgrading from madlib_gppkg_1.16+1 to madlib_gppkg_1.16+2
on Redhat / CentOS run the following as gpadmin:
gppkg -u <madlib_package_upgrading_to> |
MADlib deployment in the database does not need to be upgraded as the MADlib version has not changed.
Sometimes there are release specific variations of the installation procedures. These exceptions are listed in this section.
Currently, upgrading the rpm from 1.15 using rpm -U does not work due to a change in the rpm post uninstall script in MADlib version 1.15.1. Below are the steps to follow to upgrade from MADlib version 1.15:
The upgrade to v1.13 has a minor problem with some leftover functions. The issue can be fixed with the following commands before running the regular madpack upgrade command.
psql <<DB_NAME>> -c "DROP FUNCTION IF EXISTS <<SCHEMA>>.knn(VARCHAR);" psql <<DB_NAME>> -c "DROP FUNCTION IF EXISTS <<SCHEMA>>.knn();" |
<<DB_NAME>> denotes the name of the database.
<<SCHEMA>> denotes the name of the madlib schema.
We have also attached a script to this wiki page called 'fix_upgrade.sh' that you can use.
The procedure exactly the same as described below for installation of MADlib on GPDB 4.3.10 .
This is an important note for installation of MADlib on GPDB 4.3.10. It does not apply to any other releases.
1) Fix madpack install utility
* issue: After gppkg installation MADlib, you must run the script
fix_madpack.sh BEFORE running the madpack utility (see below). The script is downloadable from the Pivotal Network.
2) install checks
* issue: some failures may happen on MADlib install checks, however the MADlib install actually completed OK.
This is a poor customer experience that will be fixed in the next release. On the positive side, once the installation is done, MADlib should work OK.
------------------------------
More on fixing madpack from #1 above:
After gppkg installation MADlib, you must run the script
fix_madpack.sh BEFORE running the madpack utility.
The syntax for fix_madpack.sh is below.
This can be somewhat confusing because after gppkg
installation, you will get a message on the console
that says:
“Please run the following command to deploy MADlib
usage: madpack install [-s schema_name] -p hawq -c user@host:port/database
etc...”
So the correct order of operations is:
1. gppkg install of MADlib
2. run fix_madpack.sh
3. run madpack utility
*****************************************************
COMMAND NAME: fix_madpack.sh
*****************************************************
Script to fix a MADlib installation issue on GPDB 4.3.10.
This script patches a line in madpack.py, the MADlib installation
script. A backup of the original file is created in the same folder as
madpack.py called 'madpack.py.orig'. The script is downloadable from the Pivotal Network.
*****************************************************
SYNOPSIS
*****************************************************
fix_madpack.sh [--prefix <MADLIB_INSTALL_PATH>]
fix_madpack.sh -h
*****************************************************
PREREQUISITES
*****************************************************
The following tasks should be performed prior to executing this script:
* Set $GPHOME to the correct GPDB installation directory containing MADlib
OR
* Set MADlib installation path using the --prefix option
*****************************************************
OPTIONS
*****************************************************
--prefix <MADLIB_INSTALL_PATH>
Optional. Expected MADlib installation path. If not set, the default value
${GPHOME}/madlib is used.
-h | -? | --help
Displays the online help.
*****************************************************
EXAMPLE
*****************************************************
/home/gpadmin/madlib/fix_madpack.sh --prefix /usr/local/gpdb/madlib